重组蛋白融合信号肽在大肠杆菌周质空间表达的研究进展

重组蛋白在大肠杆菌中表达时,往往面临着形成包涵体的问题,而重组蛋白若是分泌至周质空间则基本解决了这一问题,周质空间的周质蛋白不仅能帮助重组蛋白正确折叠还有利于二硫键的生成。信号肽是一段由15-30个氨基酸组成,被融合在重组蛋白N端的短肽,按照结构、功能的不同可以划分为N区、H区和C区,具有引导重组蛋白转运至细胞周质空间的作用。本文综述了信号肽的结构组成、作用机理和基本分泌途径,讨论了信号肽的高效转运和筛选方法,总结了在大肠杆菌中重组蛋白融合信号肽实现周质表达的新进展,并对未来高效信号肽选择方面的研究进行了探讨。     

Quantifying personal exposure to air pollution from smartphone‐based location data

Personal exposure assessment is a challenging task that requires both measurements of the state of the environment as well as the individual's movements. In this paper, we show how location data collected by smartphone applications can be exploited to quantify the personal exposure of a large group of people to air pollution. A Bayesian approach that blends air quality monitoring data with individual location data is proposed to assess the individual exposure over time, under uncertainty of both the pollutant level and the individual location. A comparison with personal exposure obtained assuming fixed locations for the individuals is also provided. Location data collected by the Earthquake Network research project are employed to quantify the dynamic personal exposure to fine particulate matter of around 2500 people living in Santiago (Chile) over a 4‐month period. For around 30% of individuals, the personal exposure based on people movements emerges significantly different over the static exposure. On the basis of this result and thanks to a simulation study, we claim that even when the individual location is known with nonnegligible error, this helps to better assess personal exposure to air pollution. The approach is flexible and can be adopted to quantify the personal exposure based on any location‐aware smartphone application.     

Atlantic Forest topsoil nutrients can be resistant to disturbance and forest clearing

Human impacts can affect the soil properties through erosion and leaching, the ecosystem functions and, consequently, the capacity of a forest to regenerate. Here, we determine the effects of forest disturbance and succession on selected soil chemical properties using two different approaches, before‐after‐control‐impact (BACI) and space‐for‐time (SFT) substitution, and the threatened Atlantic Forest biome as model. We assessed with BACI the long‐term (37‐year) effects of clear cutting on soil properties by comparing data from two topsoil surveys (1978–2017) divided into two treatments: a preserved old growth forest (control) and an adjacent forest that was experimentally cleared with full tree removal (clear‐cut). We examined with SFT the relationship between stand age and soil properties using soil data from three old growth and 13 s growth forests ranging from 7 to 33 years. We found no significant differences between treatments for any soil property or significant changes in phosphorus, potassium, and calcium + magnesium over time. In contrast, pH increased and aluminum decreased in both areas. No relation was found between forest age and most of soil properties, with the exception of potassium which returned to old growth forest levels after 20 years of natural succession, and pH. BACI indicated that deforestation of old growth forest caused no significant effects on soil chemical properties after 37 years of regeneration. SFT demonstrated that soil properties did not change significantly during forest regeneration on formerly disturbed lands. Our findings indicate that natural nutrient‐depleted lowland forests were overall resistant to deforestation followed by passive regeneration at landscape scale. Abstract in Portuguese is available with online material.     

北京城区人工构筑物对比邻绿地土壤温度和含水量的影响

选取城市中分布最广的两类人工构筑物——沥青和混凝土为研究对象,采用构筑物-绿地梯度样带法,观测这2类典型城市构筑物对比邻绿地土壤温度和含水量的影响,分析不同构筑物的质地、面积、形态等构筑物特征对土壤水、热分布的影响强度及范围。研究显示:1)夏、秋季在构筑物-绿地梯度样带上,绿地土壤温度在比邻构筑物端(a点)处最高,并且白天中午、傍晚时段a点温度显著高于梯度上其他观测点和对照点;2)绿地土壤含水量在比邻构筑物端(a点)处最低,而且土壤含水量变化在梯度样带上从a点至远离构筑物端的对照点变化具有不确定性,可能受城区土壤蒸散、人工灌溉、土壤地下生物量等不确定因素的影响。3)梯度样带上土壤温度(T)和水分(W)与离a点距离(D)均呈现幂函数定量关系,即沥青样地T=0.7708(579.4957-0.9984D)0.5843,W=0.1970(0.0505+0.1347D)0.2262;混凝土样地T=0.7615(583.7027-1.0986D)0.5746,W=0.2224(-0.6019+0.3473D)0.0595。4)在构筑物-绿地梯度样带上,土壤温度和含水量受构筑物影响幅度大概在0—100 cm之间,而且随构筑物质地及分布格局、城市气象以及绿地构成、结构、人工管理方式等因素的影响而变化。     

Being Muslim and being Irish after 9/11: self-conceptions of place in Irish society

There has been a significant, well-established if somewhat invisible Muslim population in Ireland since the 1950s. An increase in immigration during the Celtic tiger years along with the hysteria of 9/11 caused a rapid visibilization of this population. Muslims became synonymous with extremism and terrorism, but also fell victim to racist constructions emerging from the economic decline. The experience of Muslim youth since 9/11 has been well researched in the UK and Europe, however there has been little empirical work conducted with Ireland’s Muslim communities. In the literature, it is assumed that the British experience is replicated for Muslim youth in Ireland – this is not the case. This paper examines the lived experience of Irish Muslim youth given the visibilization of Islam after 9/11 and their ensuing experiences of Irishness. An analysis of ethnographic data reveals the idiosyncratic experiences of these youth growing up in the shadow of a discriminatory and Islamophobic narrative on extremism and terrorism and an evolving immigrant landscape.     

Nonlinearities in protein space limit the utility of informatics in protein biophysics

We examine the utility of informatic‐based methods in computational protein biophysics. To do so, we use newly developed metric functions to define completely independent sequence and structure spaces for a large database of proteins. By investigating the relationship between these spaces, we demonstrate quantitatively the limits of knowledge‐based correlation between the sequences and structures of proteins. It is shown that there are well‐defined, nonlinear regions of protein space in which dissimilar structures map onto similar sequences (the conformational switch), and dissimilar sequences map onto similar structures (remote homology). These nonlinearities are shown to be quite common—almost half the proteins in our database fall into one or the other of these two regions. They are not anomalies, but rather intrinsic properties of structural encoding in amino acid sequences. It follows that extreme care must be exercised in using bioinformatic data as a basis for computational structure prediction. The implications of these results for protein evolution are examined. Proteins 2015; 83:1923–1928. © 2015 Wiley Periodicals, Inc.     

提取航天诱变向日葵种子总RNA的一种有效方法

目的:从航天诱变向日葵种子中提取高质量的总RNA.方法:采用改进的SDS法,提取缓冲液与氯仿同时作用液氮研磨材料后,用酸酚-氯仿抽提一次,经LiCl过夜沉淀、DNase I处理、1/2体积的无水乙醇沉淀多糖,最后加入1/10体积的醋酸钠和2倍体积的无水乙醇沉淀总RNA,用琼脂糖凝胶电泳与紫外分光光度法测定产量与纯度,用...     

青岛市城市绿地生态系统的环境净化服务价值

在分析青岛市城市绿地空间分布及面积动态变化基础上,利用市场价值法、生产成本法、替代费用法等方法计算了1999-2009年各年度青岛市城市绿地生态系统的环境净化服务价值。结果表明,1999-2009年青岛市城市绿地的环境净化服务价值由1.587×10⁸元增至3.491×10⁸元,人均城市绿地的环境净化服务价值由68.42元增至126.73元。11a间青岛市城市绿地的环境净化服务价值增加了1.904×10⁸元,平均年增长率为10.91%。在青岛市城市绿地生态系统环境净化服务总价值构成中,其气体调节服务价值占总价值的49.81%- 51.72%,而吸收有害气体和滞尘服务价值、减弱噪声服务价值占48.28%-50.19%。城市绿地的气体调节服务具有地域空间的可转移性,可以由城市以外的自然生态系统补偿;而其吸收有害气体和滞尘服务与减弱噪声服务则不具有地域空间的可转移性。加强城市绿地建设、提高城市绿化水平是改善青岛市城市环境和提高城市居民生活质量的有效措施。